Targets’ report corresponding to the functions that annotate any original expression matrix (with gene symbols as ids in rows, and sample ids in columns) and expands the annotated matrix to include the average (or sum) values for the annotations (as new extra rows)
## Loading required package: plotly##
## Attaching package: 'plotly'## The following object is masked from 'package:ggplot2':
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## last_plot## The following object is masked from 'package:AnnotationDbi':
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## select## The following object is masked from 'package:IRanges':
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## slice## The following object is masked from 'package:S4Vectors':
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## rename## The following object is masked from 'package:stats':
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## filter## The following object is masked from 'package:graphics':
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## layout## Loading required package: viridis## Loading required package: viridisLite##
## ======================
## Welcome to heatmaply version 1.3.0
##
## Type citation('heatmaply') for how to cite the package.
## Type ?heatmaply for the main documentation.
##
## The github page is: https://github.com/talgalili/heatmaply/
## Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
## You may ask questions at stackoverflow, use the r and heatmaply tags:
## https://stackoverflow.com/questions/tagged/heatmaply
## ======================##
## Attaching package: 'heatmaply'## The following object is masked from 'package:BiocGenerics':
##
## normalizeData loaded from files data/mrna.csv and data/prots.csv
Samples in rows; Features in columns
## # A tibble: 150 x 201
## sample RTN2 NDRG2 CCDC113 FAM63A ACADS GMDS HLA.H SEMA4A ETS2 LIMD2 NME3 ZEB1 CDCP1 GIYD2 RTKN2 MANSC1
## <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
## 1 A0FJ 4.36 7.53 3.96 4.46 2.26 6.02 5.01 3.22 4.73 5.10 4.56 3.99 6.42 2.47 4.58 8.08
## 2 A13E 1.98 7.46 5.43 5.44 4.03 4.34 6.18 2.86 5.41 4.21 5.14 3.76 6.61 4.98 5.17 7.30
## 3 A0G0 1.73 8.08 2.23 5.54 2.63 6.36 6.04 5.95 5.65 3.30 4.45 3.85 6.41 3.20 4.24 7.99
## 4 A0SX 4.36 5.79 3.54 4.74 4.27 4.00 7.09 5.01 5.90 5.48 3.76 5.23 6.02 4.30 4.25 5.41
## 5 A143 2.45 7.16 4.69 4.81 2.44 7.03 5.94 5.90 6.64 5.51 4.24 3.54 7.09 5.71 3.96 8.49
## 6 A0DA 4.77 8.75 4.31 5.31 3.24 4.24 6.91 6.59 5.86 3.77 4.26 4.80 6.05 4.01 2.07 5.90
## 7 A0B3 3.35 5.10 0.593 5.22 3.89 5.92 8.04 6.53 6.31 4.11 4.79 4.26 7.27 4.64 3.53 5.03
## 8 A0I2 1.81 3.79 2.72 4.36 4.20 4.83 9.13 4.98 5.30 5.15 5.76 2.46 3.79 6.90 1.91 6.39
## 9 A0RT 2.09 6.33 2.36 4.04 4.13 4.29 7.59 5.94 6.57 7.07 5.13 5.55 3.85 5.66 4.27 3.71
## 10 A131 4.34 4.70 3.64 4.03 3.14 5.25 6.35 6.06 6.32 4.89 5.73 4.52 6.57 5.42 3.36 5.74
## # ... with 140 more rows, and 184 more variables: TAGLN <dbl>, IFIT3 <dbl>, ARL4C <dbl>, HTRA1 <dbl>,
## # KIF13B <dbl>, CPPED1 <dbl>, SKAP2 <dbl>, ASPM <dbl>, KDM4B <dbl>, TBXAS1 <dbl>, MT1X <dbl>, MED13L <dbl>,
## # SNORA8 <dbl>, RGS1 <dbl>, CBX6 <dbl>, WWC2 <dbl>, TNFRSF12A <dbl>, ZNF552 <dbl>, MAPRE2 <dbl>,
## # SEMA5A <dbl>, STAT5A <dbl>, FLI1 <dbl>, COL15A1 <dbl>, C7orf55 <dbl>, ASF1B <dbl>, FUT8 <dbl>,
## # LASS4 <dbl>, SQLE <dbl>, GPC4 <dbl>, AKAP12 <dbl>, AGL <dbl>, ADAMTS4 <dbl>, EPHB3 <dbl>, MAP3K1 <dbl>,
## # PRNP <dbl>, PROM2 <dbl>, SLCO3A1 <dbl>, SNHG1 <dbl>, PRKCDBP <dbl>, MXI1 <dbl>, CSF1R <dbl>, TANC2 <dbl>,
## # SLC19A2 <dbl>, RHOU <dbl>, C4orf34 <dbl>, LRIG1 <dbl>, DOCK8 <dbl>, BOC <dbl>, C11orf52 <dbl>, ...## # A tibble: 150 x 112
## sample YWHAE EIF4EBP1 TP53BP1 ARAF ACACA ACCB PRKAA1 ANLN AR ARID1A ASNS ATM
## <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
## 1 A0FJ 0.0491 0.447 0.918 0.0227 -0.0863 -0.417 0.285 0.172 -1.31 0.505 0.811 -0.496
## 2 A13E -0.0800 0.605 0.0591 -0.460 -0.593 -0.0623 -0.275 0.222 -1.62 0.340 1.18 -0.276
## 3 A0G0 -0.0328 0.895 0.517 -0.192 0.411 0.826 0.0677 0.122 -1.08 0.227 1.95 0.771
## 4 A0SX -0.205 -0.141 -0.314 -0.0748 -0.851 -0.663 0.0296 1.05 -1.27 0.355 0.607 0.781
## 5 A143 0.0602 0.132 0.331 -0.0244 0.770 0.873 -0.217 0.0138 -0.601 0.544 0.539 0.0139
## 6 A0DA 0.0308 0.0330 -0.220 0.419 -0.714 -0.218 -0.0631 0.0603 -1.21 -0.111 0.312 0.0717
## 7 A0B3 -0.108 -0.0371 -0.545 0.431 -0.363 -0.269 -0.0776 0.00887 -1.02 -0.233 1.14 -0.210
## 8 A0I2 0.650 -0.521 -1.60 -0.187 1.08 1.59 -0.0775 -0.0519 -0.421 -0.355 -0.633 -0.924
## 9 A0RT -0.0137 -0.635 -0.721 -0.375 -1.25 -0.901 -0.178 -0.0419 -0.952 -0.179 0.145 0.834
## 10 A131 0.431 1.05 -0.811 0.353 -0.883 -0.681 0.261 -0.00213 -0.180 -0.475 0.573 -1.44
## # ... with 140 more rows, and 99 more variables: AKT1 <dbl>, ANXA1 <dbl>, BRAF <dbl>, BAK1 <dbl>, BAX <dbl>,
## # BCL2 <dbl>, BCLX <dbl>, BECN1 <dbl>, BID <dbl>, BCL2L11 <dbl>, RAF1 <dbl>, PECAM1 <dbl>, ITGA2 <dbl>,
## # CDK1 <dbl>, CASP7 <dbl>, CAV1 <dbl>, CHEK1 <dbl>, CHEK2 <dbl>, CLDN7 <dbl>, COL6A1 <dbl>, CCNB1 <dbl>,
## # CCND1 <dbl>, CCNE1 <dbl>, PARK7 <dbl>, DVL3 <dbl>, CDH1 <dbl>, EGFR <dbl>, ESR1 <dbl>, MAPK1 <dbl>,
## # FOXO3 <dbl>, FN1 <dbl>, GAB2 <dbl>, GATA3 <dbl>, GSK3A <dbl>, ERBB2 <dbl>, ERBB3 <dbl>, HSPA1A <dbl>,
## # IGFBP2 <dbl>, INPP4B <dbl>, IRS1 <dbl>, MAPK9 <dbl>, MAPK8 <dbl>, KRAS <dbl>, XRCC5 <dbl>, LCK <dbl>,
## # MAPK1_1 <dbl>, MAP2K1 <dbl>, ERRFI1 <dbl>, MRE11 <dbl>, CDH2 <dbl>, NF2 <dbl>, NOTCH1 <dbl>, ...Input from data/mrna.csv: Features in ROWS: 200 Samples in COLUMNS: 150
Input from data/prots.csv: Features in ROWS: 111 Samples in COLUMNS: 150
(Showing only partial output)
tar_read(dframe1)[1:10,1:10]## A0FJ A13E A0G0 A0SX A143 A0DA A0B3 A0I2 A0RT A131
## RTN2 4.362183 1.984492 1.727323 4.363996 2.447562 4.770798 3.3520618 1.810382 2.094460 4.340912
## NDRG2 7.533461 7.455194 8.079968 5.793750 7.158993 8.748061 5.0984040 3.791965 6.327973 4.699950
## CCDC113 3.956124 5.427623 2.227300 3.544866 4.691256 4.305401 0.5932056 2.719169 2.357933 3.639056
## FAM63A 4.457170 5.440957 5.543480 4.737114 4.808728 5.307480 5.2175851 4.355919 4.041661 4.030187
## ACADS 2.256817 4.028813 2.629855 4.269101 2.442135 3.239909 3.8851534 4.200249 4.126817 3.135697
## GMDS 6.017940 4.341692 6.363030 4.001104 7.029723 4.236539 5.9178858 4.830286 4.292798 5.251649
## HLA.H 5.006907 6.178668 6.039563 7.087633 5.936138 6.909727 8.0433411 9.130370 7.591606 6.349572
## SEMA4A 3.217812 2.864659 5.946028 5.007565 5.901459 6.591109 6.5328925 4.982386 5.941057 6.055191
## ETS2 4.734446 5.411029 5.651670 5.902449 6.641225 5.858016 6.3091167 5.304488 6.571389 6.317800
## LIMD2 5.099598 4.211397 3.304513 5.479451 5.508654 3.766283 4.1138727 5.149344 7.071896 4.885183tar_read(dframe2)[1:10,1:10]## A0FJ A13E A0G0 A0SX A143 A0DA A0B3 A0I2
## YWHAE 0.04913078 -0.07998211 -0.03284989 -0.20532949 0.06019021 0.03076171 -0.107861537 0.64984396
## EIF4EBP1 0.44748623 0.60521842 0.89460973 -0.14132292 0.13176899 0.03299680 -0.037124691 -0.52148657
## TP53BP1 0.91783419 0.05910121 0.51704453 -0.31372867 0.33091238 -0.22027100 -0.544743061 -1.60203535
## ARAF 0.02274147 -0.45985298 -0.19182192 -0.07482347 -0.02435747 0.41861665 0.430503500 -0.18714658
## ACACA -0.08626782 -0.59269183 0.41117190 -0.85148060 0.76975143 -0.71430870 -0.363474049 1.07761482
## ACCB -0.41662442 -0.06226840 0.82582859 -0.66341044 0.87347870 -0.21752677 -0.269313837 1.58998239
## PRKAA1 0.28527039 -0.27523360 0.06774184 0.02956373 -0.21653182 -0.06306506 -0.077581092 -0.07753959
## ANLN 0.17231110 0.22210598 0.12199399 1.05494810 0.01378422 0.06025690 0.008872461 -0.05187936
## AR -1.30760569 -1.62047596 -1.07789444 -1.26705469 -0.60132744 -1.20803848 -1.016297633 -0.42122691
## ARID1A 0.50509449 0.33958160 0.22718066 0.35529767 0.54412514 -0.11094480 -0.233223615 -0.35537533
## A0RT A131
## YWHAE -0.01365044 0.430934243
## EIF4EBP1 -0.63485063 1.052571622
## TP53BP1 -0.72072329 -0.811335319
## ARAF -0.37488300 0.353262354
## ACACA -1.25449108 -0.883296744
## ACCB -0.90135358 -0.681364747
## PRKAA1 -0.17763665 0.261182525
## ANLN -0.04188024 -0.002134606
## AR -0.95232486 -0.180283541
## ARID1A -0.17919526 -0.474665632Features in ROWS; Samples in COLUMNS
p <- heatmaply(data.matrix(dframe1),
#dendrogram = "row",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(data.matrix(dframe1)),
labRow = rownames(data.matrix(dframe1)),
heatmap_layers = theme(axis.line=element_blank())
)
p# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")p <- heatmaply(data.matrix(dframe2),
#dendrogram = "row",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(data.matrix(dframe2)),
labRow = rownames(data.matrix(dframe2)),
heatmap_layers = theme(axis.line=element_blank())
)
p# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")Gene Ontology used: BP
Min. number of genes required to pass the filter: 8
Annotated categories: 13 (for data/mrna.csv)
Annotated categories: 61 (for data/prots.csv)
Shared annotated categories: GO:0000122, GO:0006357, GO:0007155, GO:0007165, GO:0007411, GO:0008285, GO:0019221, GO:0030335, GO:0045893, GO:0045944
(Showing only partial output)
tar_read(categ_sums1)## GO:0000122 GO:0006357 GO:0007155 GO:0007165 GO:0007411 GO:0008285 GO:0016477 GO:0019221 GO:0030335 GO:0043312
## 11 14 11 21 10 9 10 10 8 8
## GO:0045893 GO:0045944 GO:0055114
## 11 14 10tar_read(categ_sums2)## GO:0000082 GO:0000122 GO:0000165 GO:0000187 GO:0001525 GO:0001666 GO:0001701 GO:0001934 GO:0006357 GO:0006367
## 8 19 17 8 11 9 10 10 13 10
## GO:0006468 GO:0006915 GO:0006974 GO:0006977 GO:0007050 GO:0007155 GO:0007165 GO:0007169 GO:0007411 GO:0007507
## 24 17 14 8 10 11 30 11 8 12
## GO:0007568 GO:0008283 GO:0008284 GO:0008285 GO:0010468 GO:0010628 GO:0010629 GO:0016032 GO:0016579 GO:0018105
## 10 12 20 16 8 29 12 19 11 16
## GO:0018107 GO:0018108 GO:0019221 GO:0030154 GO:0030335 GO:0032355 GO:0032869 GO:0033138 GO:0033674 GO:0035556
## 11 11 15 11 11 10 9 9 8 17
## GO:0042060 GO:0042127 GO:0042493 GO:0042981 GO:0043065 GO:0043066 GO:0045471 GO:0045892 GO:0045893 GO:0045944
## 9 9 23 10 11 31 8 11 23 30
## GO:0046777 GO:0048538 GO:0050821 GO:0051091 GO:0051897 GO:0070374 GO:0071456 GO:0090090 GO:0098609 GO:1901796
## 10 8 8 8 12 9 11 8 9 9
## GO:2001244
## 8head(tar_read(categ_intersect1))## GO:0000122 GO:0006357 GO:0007155 GO:0007165 GO:0007411 GO:0008285 GO:0019221 GO:0030335 GO:0045893
## RTN2 0 0 0 0 0 0 0 0 0
## NDRG2 0 0 0 1 0 0 0 0 0
## CCDC113 0 0 0 0 0 0 0 0 0
## FAM63A 0 0 0 0 0 0 0 0 0
## ACADS 0 0 0 0 0 0 0 0 0
## GMDS 0 0 0 0 0 0 0 0 0
## GO:0045944
## RTN2 0
## NDRG2 0
## CCDC113 0
## FAM63A 0
## ACADS 0
## GMDS 0head(tar_read(categ_intersect2))## GO:0000122 GO:0006357 GO:0007155 GO:0007165 GO:0007411 GO:0008285 GO:0019221 GO:0030335 GO:0045893
## YWHAE 0 0 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 0 0 0 0 0 0 0 1
## ARAF 0 0 0 0 0 0 0 0 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0045944
## YWHAE 0
## EIF4EBP1 0
## TP53BP1 1
## ARAF 0
## ACACA 0
## ACCB 0tar_read(categ_intersect)## GO:0000122 GO:0006357 GO:0007155 GO:0007165 GO:0007411 GO:0008285 GO:0019221 GO:0030335 GO:0045893
## RTN2 0 0 0 0 0 0 0 0 0
## NDRG2 0 0 0 1 0 0 0 0 0
## CCDC113 0 0 0 0 0 0 0 0 0
## FAM63A 0 0 0 0 0 0 0 0 0
## ACADS 0 0 0 0 0 0 0 0 0
## GMDS 0 0 0 0 0 0 0 0 0
## HLA.H 0 0 0 0 0 0 0 0 0
## SEMA4A 0 0 0 0 1 0 0 1 0
## ETS2 1 1 0 0 0 0 0 0 1
## LIMD2 0 0 0 0 0 0 0 0 0
## NME3 0 0 0 0 0 0 0 0 0
## ZEB1 1 1 0 0 0 1 1 0 0
## CDCP1 0 0 0 0 0 0 0 0 0
## GIYD2 0 0 0 0 0 0 0 0 0
## RTKN2 0 0 0 1 0 0 0 0 0
## MANSC1 0 0 0 0 0 0 0 0 0
## TAGLN 0 0 0 0 0 0 0 0 0
## IFIT3 0 0 0 0 0 1 0 0 0
## ARL4C 0 0 0 0 0 0 0 0 0
## HTRA1 0 0 0 0 0 0 0 0 0
## KIF13B 0 0 0 1 0 0 0 0 0
## CPPED1 0 0 0 0 0 0 0 0 0
## SKAP2 0 0 0 1 0 1 0 0 0
## ASPM 0 0 0 0 0 0 0 0 0
## KDM4B 0 0 0 0 0 0 0 0 0
## TBXAS1 0 0 0 0 0 0 0 0 0
## MT1X 0 0 0 0 0 0 0 0 0
## MED13L 0 1 0 0 0 0 0 0 0
## SNORA8 0 0 0 0 0 0 0 0 0
## RGS1 0 0 0 1 0 0 0 0 0
## CBX6 1 0 0 0 0 0 0 0 0
## WWC2 1 0 0 0 0 0 0 0 0
## TNFRSF12A 0 0 0 0 0 0 0 0 0
## ZNF552 0 1 0 0 0 0 0 0 0
## MAPRE2 0 0 0 0 0 0 0 0 0
## SEMA5A 0 0 1 0 1 0 0 1 0
## STAT5A 0 1 0 0 0 0 1 0 0
## FLI1 0 1 0 0 0 0 0 0 1
## COL15A1 0 0 1 1 0 0 0 0 0
## C7orf55 0 0 0 0 0 0 0 0 0
## ASF1B 0 0 0 0 0 0 0 0 0
## FUT8 0 0 0 0 0 0 0 0 0
## LASS4 0 0 0 0 0 0 0 0 0
## SQLE 0 0 0 0 0 0 0 0 0
## GPC4 0 0 0 0 0 0 0 0 0
## AKAP12 0 0 0 0 0 0 0 0 0
## AGL 0 0 0 0 0 0 0 0 0
## ADAMTS4 0 0 0 0 0 0 0 0 0
## EPHB3 0 0 0 0 1 0 0 0 0
## MAP3K1 0 0 0 0 0 0 0 0 0
## PRNP 0 0 0 0 0 0 0 0 0
## PROM2 0 0 0 0 0 0 0 0 0
## SLCO3A1 0 0 0 0 0 0 0 0 0
## SNHG1 0 0 0 0 0 0 0 0 0
## PRKCDBP 0 0 0 0 0 0 0 0 0
## MXI1 1 0 0 0 0 0 0 0 0
## CSF1R 0 0 0 1 1 1 1 1 0
## TANC2 0 0 0 0 0 0 0 0 0
## SLC19A2 0 0 0 0 0 0 0 0 0
## RHOU 0 0 0 0 0 0 1 0 0
## C4orf34 0 0 0 0 0 0 0 0 0
## LRIG1 0 0 0 0 0 0 0 0 0
## DOCK8 0 0 0 0 0 0 0 0 0
## BOC 0 0 1 0 1 0 0 0 0
## C11orf52 0 0 0 0 0 0 0 0 0
## S100A16 0 0 0 0 0 0 0 0 0
## NRARP 1 0 0 0 0 0 0 0 0
## TTC23 0 0 0 0 0 0 0 0 0
## TBC1D4 0 0 0 0 0 0 0 0 0
## DEPDC6 0 0 0 0 0 0 0 0 0
## ILDR1 0 0 0 0 0 0 0 0 0
## SDC1 0 0 0 0 0 0 1 0 0
## STC2 0 0 0 0 0 0 0 0 0
## DTWD2 0 0 0 0 0 0 0 0 0
## TCF4 0 0 0 0 0 0 0 0 1
## ITPR2 0 0 0 1 0 0 0 0 0
## DPYD 0 0 0 0 0 0 0 0 0
## NME1 0 0 0 0 0 1 0 0 0
## EGLN3 0 0 0 0 0 0 0 0 0
## CD302 0 0 0 0 0 0 0 0 0
## AHR 1 1 0 0 0 0 0 0 1
## LAPTM4B 0 0 0 0 0 0 0 0 0
## OCLN 0 0 0 0 0 0 0 0 0
## HIST1H2BK 0 0 0 0 0 0 0 0 0
## HDAC11 0 0 0 0 0 0 0 0 0
## C18orf1 0 0 0 0 0 0 0 0 0
## C6orf192 0 0 0 0 0 0 0 0 0
## AMPD3 0 0 0 0 0 0 0 0 0
## COL6A1 0 0 1 0 0 0 0 0 0
## RAB3IL1 0 0 0 0 0 0 0 0 0
## APBB1IP 0 0 0 1 0 0 0 0 0
## PSIP1 0 1 0 0 0 0 0 0 0
## EIF2AK2 0 0 0 0 0 1 0 0 0
## CSRP2 0 0 0 0 0 0 0 0 0
## EIF4EBP3 0 0 0 0 0 0 0 0 0
## LYN 0 0 0 1 0 1 0 1 0
## WDR76 0 0 0 0 0 0 0 0 0
## SAMD9L 0 0 0 0 0 0 0 0 0
## ASPH 0 0 0 0 0 1 0 0 0
## RBL1 1 0 0 0 0 0 0 0 0
## SLC43A3 0 0 0 0 0 0 0 0 0
## HN1 0 0 0 0 0 0 0 0 0
## TTC39A 0 0 0 0 0 0 0 0 0
## MTL5 0 0 0 0 0 0 0 0 0
## NES 0 0 0 0 0 0 0 0 0
## APOD 0 0 0 0 0 0 0 0 0
## RIN3 0 0 0 1 0 0 0 0 0
## ALCAM 0 0 1 1 0 0 0 0 0
## C1orf38 0 0 0 0 0 0 0 0 0
## PLCD3 0 0 0 0 0 0 0 0 0
## BSPRY 0 0 0 0 0 0 0 0 0
## NTN4 0 0 0 0 1 0 0 0 0
## IL1R1 0 0 0 0 0 0 1 0 0
## EMP3 0 0 0 0 0 0 0 0 0
## ZKSCAN1 0 1 0 0 0 0 0 0 0
## FMNL2 0 0 0 0 0 0 0 0 0
## OGFRL1 0 0 0 0 0 0 0 0 0
## IRF5 0 0 0 0 0 0 0 0 0
## IGSF3 0 0 0 0 0 0 0 0 0
## DBP 0 1 0 0 0 0 0 0 0
## CNN2 0 0 0 0 0 0 0 0 0
## CAMK2D 0 1 0 0 0 0 0 0 0
## SIGIRR 0 0 0 1 0 0 0 0 0
## AKAP9 0 0 0 1 0 0 0 0 0
## ICA1 0 0 0 0 0 0 0 0 0
## FGD5 0 0 0 0 0 0 0 0 0
## DSG2 0 0 1 0 0 0 0 0 0
## E2F1 1 0 0 0 0 0 0 0 1
## QSOX1 0 0 0 0 0 0 0 0 0
## TOB1 0 0 0 0 0 1 0 0 0
## CSF3R 0 0 1 1 0 0 1 0 0
## SHROOM3 0 0 0 0 0 0 0 0 0
## CCDC80 0 0 0 0 0 0 0 0 0
## FRMD6 0 0 0 0 0 0 0 0 0
## CXCL12 0 0 1 1 1 0 0 1 0
## CCNA2 0 0 0 0 0 0 0 0 1
## TIGD5 0 0 0 0 0 0 0 0 0
## ALDH6A1 0 0 0 0 0 0 0 0 0
## POSTN 0 0 1 0 0 0 0 0 0
## FZD4 0 0 0 0 0 0 1 0 1
## NCAPG2 0 0 0 0 0 0 0 0 0
## SDC4 0 0 0 0 0 0 0 0 0
## SNED1 0 0 0 0 0 0 0 0 0
## PLEKHA4 0 0 0 0 0 0 0 0 0
## KCNAB2 0 0 0 0 0 0 0 0 0
## SH3KBP1 0 0 0 0 1 0 0 0 0
## IGSF9 0 0 0 0 1 0 0 0 0
## DNLZ 0 0 0 0 0 0 0 0 0
## S1PR3 0 0 0 0 0 0 0 0 0
## PTPRE 0 0 0 0 0 0 0 0 0
## FLJ23867 0 0 0 0 0 0 0 0 0
## PLSCR1 0 0 0 0 0 0 0 0 0
## LMO4 0 0 0 0 0 0 0 0 0
## IFITM2 0 0 0 0 0 0 0 0 0
## LRRC25 0 0 0 0 0 0 0 0 0
## TST 0 0 0 0 0 0 0 0 0
## NCF4 0 0 0 0 0 0 0 0 0
## NCOA7 0 0 0 0 0 0 0 0 0
## IL4R 0 0 0 1 0 0 1 0 0
## CCDC64B 0 0 0 0 0 0 0 0 0
## SGPP1 0 0 0 0 0 0 0 0 0
## RUNX3 1 1 0 0 0 0 0 0 1
## SLC5A6 0 0 0 0 0 0 0 0 0
## IFIH1 0 0 0 0 0 0 0 0 0
## PREX1 0 0 0 0 0 0 0 1 0
## PLAUR 0 0 0 1 0 0 0 0 0
## CDK18 0 0 0 0 0 0 0 0 0
## SLC43A2 0 0 0 0 0 0 0 0 0
## GK 0 0 0 0 0 0 0 0 0
## ICAM2 0 0 1 0 0 0 0 0 0
## YPEL2 0 0 0 0 0 0 0 0 0
## CBR1 0 0 0 0 0 0 0 0 0
## MEX3A 0 0 0 0 0 0 0 0 0
## ZNRF3 0 0 0 0 0 0 0 0 0
## PTPRM 0 0 0 1 0 0 0 0 0
## C1orf162 0 0 0 0 0 0 0 0 0
## GAS6 0 0 0 1 0 0 0 0 0
## C1QB 0 0 0 0 0 0 0 0 0
## PVRL4 0 0 0 0 0 0 0 0 0
## CTSK 0 0 0 0 0 0 0 0 0
## MRVI1 0 0 0 0 0 0 0 0 0
## LEF1 1 0 0 0 0 0 0 1 1
## PLCD4 0 0 0 0 0 0 0 0 0
## ZNF37B 0 0 0 0 0 0 0 0 0
## MEGF9 0 0 0 0 0 0 0 0 0
## GINS2 0 0 0 0 0 0 0 0 0
## FAM13A 0 0 0 1 0 0 0 0 0
## CPT1A 0 0 0 0 0 0 0 0 0
## SNX10 0 0 0 0 0 0 0 0 0
## TRIM45 0 0 0 0 0 0 0 0 1
## ELP2 0 1 0 0 0 0 0 0 0
## ALOX5 0 0 0 0 0 0 1 0 0
## AMN1 0 0 0 0 0 0 0 0 0
## CERCAM 0 0 1 0 0 0 0 0 0
## SEMA3C 0 0 0 0 1 0 0 1 0
## KRT8 0 0 0 0 0 0 0 0 0
## TP53INP2 0 0 0 0 0 0 0 0 1
## JAM3 0 0 0 0 0 0 0 0 0
## ZNF680 0 0 0 0 0 0 0 0 0
## PBX1 0 1 0 0 0 0 0 0 0
## YWHAE 0 0 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 0 0 0 0 0 0 0 1
## ARAF 0 0 0 0 0 0 0 0 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## PRKAA1 0 0 0 1 0 0 0 0 0
## ANLN 0 0 0 0 0 0 0 0 0
## AR 1 1 0 1 0 1 0 0 1
## ARID1A 1 1 0 0 0 0 0 0 1
## ASNS 0 0 0 0 0 0 0 0 0
## ATM 0 0 0 1 0 0 0 1 0
## AKT1 0 0 0 1 0 0 1 0 1
## ANXA1 0 0 0 1 0 0 1 0 0
## BRAF 0 0 0 0 0 0 0 0 0
## BAK1 0 0 0 0 0 1 0 0 0
## BAX 0 0 0 0 0 0 0 0 0
## BCL2 0 0 0 0 0 0 1 0 0
## BCLX 0 0 0 0 0 0 0 0 0
## BECN1 0 0 0 0 0 0 0 0 0
## BID 0 0 0 0 0 0 0 0 0
## BCL2L11 0 0 0 0 0 0 0 0 0
## RAF1 0 0 0 1 0 1 0 0 0
## PECAM1 0 0 0 1 0 0 0 1 0
## ITGA2 0 0 1 0 0 0 0 0 0
## CDK1 0 0 0 0 0 0 0 0 0
## CASP7 0 0 0 0 0 0 0 0 0
## CAV1 1 0 0 0 0 0 0 1 0
## CHEK1 0 0 0 0 0 0 0 0 0
## CHEK2 0 0 0 0 0 0 0 0 1
## CLDN7 0 0 1 0 0 0 0 0 0
## COL6A1 0 0 1 0 0 0 0 0 0
## CCNB1 0 0 0 0 0 0 0 0 0
## CCND1 1 0 0 0 0 0 1 0 0
## CCNE1 1 0 0 0 0 0 0 0 0
## PARK7 0 0 0 0 0 0 0 0 0
## DVL3 0 0 0 0 0 0 0 0 1
## CDH1 0 0 0 0 0 0 0 0 1
## EGFR 0 1 0 1 0 0 0 1 1
## ESR1 1 1 0 1 0 0 0 0 1
## MAPK1 0 0 0 1 1 0 0 0 1
## FOXO3 1 1 0 0 0 0 1 0 1
## FN1 0 0 1 0 0 0 1 0 0
## GAB2 0 0 0 0 1 0 1 0 0
## GATA3 1 0 0 1 1 1 1 0 1
## GSK3A 0 0 0 1 0 0 0 0 0
## ERBB2 0 1 0 1 0 0 0 0 0
## ERBB3 0 0 0 1 0 0 0 0 0
## HSPA1A 0 0 0 0 0 1 0 0 0
## IGFBP2 0 0 0 1 0 0 0 0 0
## INPP4B 0 0 0 1 0 0 0 0 0
## IRS1 0 0 0 1 0 0 0 0 0
## MAPK9 0 0 0 0 0 0 0 0 0
## MAPK8 0 0 0 0 0 0 0 0 0
## KRAS 0 0 0 0 0 0 1 0 0
## XRCC5 0 0 0 0 0 0 0 0 0
## LCK 0 0 0 0 0 0 0 0 0
## MAPK1_1 0 0 0 0 0 0 0 0 0
## MAP2K1 0 0 0 1 0 1 0 0 1
## ERRFI1 0 0 0 0 0 0 0 0 0
## MRE11 0 0 0 0 0 0 0 0 0
## CDH2 0 0 1 0 0 0 0 0 0
## NF2 0 0 0 0 0 1 0 0 0
## NOTCH1 1 0 0 0 1 1 0 1 1
## CDH3 0 0 1 0 0 0 0 0 0
## SERPINE1 0 0 0 0 0 0 0 0 0
## PCNA 1 0 0 0 0 0 0 0 0
## PDCD4 0 0 0 0 0 0 0 0 0
## PDK1 0 0 0 0 0 0 0 0 0
## PRKCA 0 0 1 0 1 0 0 1 0
## PRKCD 0 0 0 1 0 0 0 0 0
## PGR 0 1 0 1 0 0 0 0 0
## AKT1S1 0 0 0 0 0 0 0 0 0
## PRDX1 0 0 0 0 0 0 0 0 0
## PTEN 0 0 0 0 0 1 0 0 0
## PXN 0 0 1 1 0 0 0 0 0
## PEA15 0 0 0 0 0 0 0 0 0
## RBM3 0 0 0 0 0 0 0 0 0
## RAD50 0 0 0 0 0 0 0 0 0
## RB1 1 0 0 0 0 0 0 0 0
## CD1E 0 0 0 0 0 0 0 0 0
## STAT3 1 1 0 1 0 1 1 1 1
## STAT5A 0 1 0 0 0 0 1 0 0
## SHC1 0 0 0 0 1 0 1 0 1
## SMAD1 1 0 0 1 0 1 0 0 0
## SMAD3 1 1 0 0 0 0 0 1 1
## SMAD4 1 0 0 0 1 1 0 0 1
## SRC 0 0 1 1 1 0 0 0 1
## STMN1 0 0 0 1 0 0 0 0 0
## SYK 0 0 0 0 0 0 0 0 0
## TGM1 0 0 0 0 0 0 0 0 0
## TSC2 0 0 0 0 0 1 0 0 0
## KDR 0 0 0 0 0 0 0 1 0
## XBP1 0 0 0 0 0 0 0 1 0
## XRCC1 0 0 0 0 0 0 0 0 0
## YAP1 0 0 0 0 0 0 0 0 1
## YBX1 1 0 0 0 0 0 0 0 0
## CTNNA1 0 0 1 0 0 0 0 0 0
## CTNNB1 1 0 1 0 0 1 0 0 1
## KIT 0 1 0 1 0 0 1 1 0
## MET 0 0 0 1 0 0 0 0 0
## MYC 1 1 0 0 0 0 1 0 1
## EEF2 0 0 0 0 0 0 0 0 0
## EEF2K 0 0 0 0 0 0 0 0 0
## EIF4E 0 0 0 0 0 0 0 0 0
## MTOR 0 0 0 0 0 0 0 0 0
## CDKN1B 0 0 0 0 0 1 0 0 0
## MAPK14 0 1 0 1 0 0 0 0 0
## TP53 1 0 0 0 0 1 1 0 1
## RPS6KB1 0 0 0 1 0 0 0 0 0
## RPS6KA1 0 0 0 1 0 0 0 0 0
## GO:0045944
## RTN2 0
## NDRG2 0
## CCDC113 0
## FAM63A 0
## ACADS 0
## GMDS 0
## HLA.H 0
## SEMA4A 0
## ETS2 1
## LIMD2 0
## NME3 0
## ZEB1 1
## CDCP1 0
## GIYD2 0
## RTKN2 0
## MANSC1 0
## TAGLN 0
## IFIT3 0
## ARL4C 0
## HTRA1 0
## KIF13B 0
## CPPED1 0
## SKAP2 0
## ASPM 0
## KDM4B 0
## TBXAS1 0
## MT1X 0
## MED13L 0
## SNORA8 0
## RGS1 0
## CBX6 0
## WWC2 0
## TNFRSF12A 0
## ZNF552 0
## MAPRE2 0
## SEMA5A 0
## STAT5A 1
## FLI1 1
## COL15A1 0
## C7orf55 0
## ASF1B 0
## FUT8 0
## LASS4 0
## SQLE 0
## GPC4 0
## AKAP12 0
## AGL 0
## ADAMTS4 0
## EPHB3 0
## MAP3K1 0
## PRNP 0
## PROM2 0
## SLCO3A1 0
## SNHG1 0
## PRKCDBP 0
## MXI1 0
## CSF1R 0
## TANC2 0
## SLC19A2 0
## RHOU 0
## C4orf34 0
## LRIG1 0
## DOCK8 0
## BOC 0
## C11orf52 0
## S100A16 0
## NRARP 0
## TTC23 0
## TBC1D4 0
## DEPDC6 0
## ILDR1 0
## SDC1 0
## STC2 0
## DTWD2 0
## TCF4 1
## ITPR2 0
## DPYD 0
## NME1 0
## EGLN3 0
## CD302 0
## AHR 1
## LAPTM4B 0
## OCLN 0
## HIST1H2BK 0
## HDAC11 0
## C18orf1 0
## C6orf192 0
## AMPD3 0
## COL6A1 0
## RAB3IL1 0
## APBB1IP 0
## PSIP1 0
## EIF2AK2 0
## CSRP2 0
## EIF4EBP3 0
## LYN 0
## WDR76 0
## SAMD9L 0
## ASPH 0
## RBL1 1
## SLC43A3 0
## HN1 0
## TTC39A 0
## MTL5 0
## NES 0
## APOD 0
## RIN3 0
## ALCAM 0
## C1orf38 0
## PLCD3 0
## BSPRY 0
## NTN4 0
## IL1R1 0
## EMP3 0
## ZKSCAN1 0
## FMNL2 0
## OGFRL1 0
## IRF5 1
## IGSF3 0
## DBP 1
## CNN2 0
## CAMK2D 0
## SIGIRR 0
## AKAP9 0
## ICA1 0
## FGD5 0
## DSG2 0
## E2F1 1
## QSOX1 0
## TOB1 0
## CSF3R 0
## SHROOM3 0
## CCDC80 0
## FRMD6 0
## CXCL12 0
## CCNA2 0
## TIGD5 0
## ALDH6A1 0
## POSTN 0
## FZD4 0
## NCAPG2 0
## SDC4 0
## SNED1 0
## PLEKHA4 0
## KCNAB2 0
## SH3KBP1 0
## IGSF9 0
## DNLZ 0
## S1PR3 0
## PTPRE 0
## FLJ23867 0
## PLSCR1 1
## LMO4 1
## IFITM2 0
## LRRC25 0
## TST 0
## NCF4 0
## NCOA7 1
## IL4R 0
## CCDC64B 0
## SGPP1 0
## RUNX3 0
## SLC5A6 0
## IFIH1 0
## PREX1 0
## PLAUR 0
## CDK18 0
## SLC43A2 0
## GK 0
## ICAM2 0
## YPEL2 0
## CBR1 0
## MEX3A 0
## ZNRF3 0
## PTPRM 0
## C1orf162 0
## GAS6 0
## C1QB 0
## PVRL4 0
## CTSK 0
## MRVI1 0
## LEF1 1
## PLCD4 0
## ZNF37B 0
## MEGF9 0
## GINS2 0
## FAM13A 0
## CPT1A 0
## SNX10 0
## TRIM45 0
## ELP2 0
## ALOX5 0
## AMN1 0
## CERCAM 0
## SEMA3C 0
## KRT8 0
## TP53INP2 0
## JAM3 0
## ZNF680 0
## PBX1 0
## YWHAE 0
## EIF4EBP1 0
## TP53BP1 1
## ARAF 0
## ACACA 0
## ACCB 0
## PRKAA1 0
## ANLN 0
## AR 1
## ARID1A 0
## ASNS 0
## ATM 1
## AKT1 1
## ANXA1 0
## BRAF 0
## BAK1 0
## BAX 0
## BCL2 0
## BCLX 0
## BECN1 0
## BID 0
## BCL2L11 0
## RAF1 1
## PECAM1 0
## ITGA2 0
## CDK1 0
## CASP7 0
## CAV1 0
## CHEK1 0
## CHEK2 0
## CLDN7 0
## COL6A1 0
## CCNB1 0
## CCND1 0
## CCNE1 0
## PARK7 1
## DVL3 1
## CDH1 0
## EGFR 1
## ESR1 1
## MAPK1 0
## FOXO3 1
## FN1 0
## GAB2 0
## GATA3 1
## GSK3A 1
## ERBB2 0
## ERBB3 0
## HSPA1A 0
## IGFBP2 0
## INPP4B 0
## IRS1 0
## MAPK9 0
## MAPK8 0
## KRAS 0
## XRCC5 0
## LCK 0
## MAPK1_1 0
## MAP2K1 0
## ERRFI1 0
## MRE11 0
## CDH2 0
## NF2 0
## NOTCH1 1
## CDH3 0
## SERPINE1 1
## PCNA 0
## PDCD4 0
## PDK1 0
## PRKCA 0
## PRKCD 0
## PGR 1
## AKT1S1 0
## PRDX1 0
## PTEN 0
## PXN 0
## PEA15 0
## RBM3 0
## RAD50 0
## RB1 1
## CD1E 0
## STAT3 1
## STAT5A 1
## SHC1 0
## SMAD1 1
## SMAD3 1
## SMAD4 1
## SRC 0
## STMN1 0
## SYK 0
## TGM1 0
## TSC2 0
## KDR 0
## XBP1 1
## XRCC1 0
## YAP1 1
## YBX1 1
## CTNNA1 0
## CTNNB1 1
## KIT 0
## MET 1
## MYC 1
## EEF2 0
## EEF2K 0
## EIF4E 0
## MTOR 0
## CDKN1B 0
## MAPK14 1
## TP53 1
## RPS6KB1 0
## RPS6KA1 1Features in ROWS: 200 (for data/mrna.csv)
Features in ROWS: 111 (for data/prots.csv)
Samples+Categs in COLUMNS: 163 (for data/mrna.csv)
Samples+Categs in COLUMNS: 211 (for data/prots.csv)
(Showing only partial output)
head(tar_read(annot_matrix1))## A0FJ A13E A0G0 A0SX A143 A0DA A0B3 A0I2 A0RT A131 A124
## RTN2 4.362183 1.984492 1.727323 4.363996 2.447562 4.770798 3.3520618 1.810382 2.094460 4.340912 1.206280
## NDRG2 7.533461 7.455194 8.079968 5.793750 7.158993 8.748061 5.0984040 3.791965 6.327973 4.699950 8.676364
## CCDC113 3.956124 5.427623 2.227300 3.544866 4.691256 4.305401 0.5932056 2.719169 2.357933 3.639056 3.753526
## FAM63A 4.457170 5.440957 5.543480 4.737114 4.808728 5.307480 5.2175851 4.355919 4.041661 4.030187 5.193696
## ACADS 2.256817 4.028813 2.629855 4.269101 2.442135 3.239909 3.8851534 4.200249 4.126817 3.135697 2.789757
## GMDS 6.017940 4.341692 6.363030 4.001104 7.029723 4.236539 5.9178858 4.830286 4.292798 5.251649 5.610192
## A1B6 A1AZ A0YM A04P A04T A0AT A0AL A0CE A07R A0FL A150
## RTN2 2.846980 1.222353 1.892681 2.293955 1.090914 2.534021 2.4179929 1.763550 3.280434 6.142850 2.308591
## NDRG2 7.790635 4.730645 6.332405 7.827413 7.436516 6.961400 8.8336442 6.544614 6.875960 10.260165 5.887077
## CCDC113 3.060775 4.506151 3.208926 1.881223 3.664815 3.319350 0.2849741 4.309775 2.222412 1.441558 3.790442
## FAM63A 3.819955 4.464141 4.559118 3.709155 5.139812 3.491093 4.6556456 5.179804 5.368074 5.961550 4.274774
## ACADS 4.125045 3.028432 3.393146 2.456713 2.409692 1.834359 4.2644283 3.688115 3.009596 3.850541 3.018863
## GMDS 5.601640 4.144106 4.708556 6.716958 5.173432 5.728591 5.7582700 5.420492 4.877815 6.642912 5.163194
## A0E0 A0U4 A0XU A0AV A0AR A0RX A0D2 A0CM A0WX A0T0 A0T2
## RTN2 0.6743217 2.218695 3.320557 3.690360 2.910988 2.179577 1.965177 1.903714 3.070428 2.360129 3.620557
## NDRG2 4.5619890 7.385044 7.341238 5.753302 9.515500 7.047445 6.725903 4.983993 6.789360 9.155272 7.013197
## CCDC113 2.2716035 4.860181 4.620859 2.898493 2.883201 3.553867 1.249060 1.779161 4.790587 4.160914 3.172523
## FAM63A 6.0971133 3.800083 4.955763 5.765022 4.940644 4.360755 3.873571 4.664145 4.569566 4.872187 4.834117
## ACADS 4.3603055 3.454774 2.629412 2.778064 4.266805 3.867138 2.698221 1.556919 3.506256 2.350685 4.589873
## GMDS 4.4246369 5.455150 5.699021 4.910252 7.105627 4.995109 5.584181 4.981640 4.736113 4.825226 5.816029
## A04U A0JL A147 A0B9 A1AI A14X A12V A1AY A0D0 A0SK A128
## RTN2 1.384660 3.243859 3.505726 2.650759 0.3327526 3.628534 2.813715 3.497809 1.949481 4.794359 1.957013
## NDRG2 8.911393 9.339442 7.000853 7.243034 7.5131668 8.894409 8.556629 5.543856 4.910012 4.484965 3.858092
## CCDC113 1.412959 3.440030 3.978750 3.947715 4.1002872 2.966176 2.243080 4.186226 3.734065 3.500417 4.236216
## FAM63A 3.002935 4.850530 5.789872 4.526164 4.4563209 6.017519 4.719815 5.140818 2.203462 4.008493 1.840127
## ACADS 4.236686 3.006019 2.561543 3.478710 2.1922975 3.740005 3.446792 3.021059 3.308981 3.099769 3.204864
## GMDS 4.715617 5.033427 3.392365 4.530231 5.4230176 6.103145 4.414810 5.021890 4.402124 3.941773 5.958135
## A04D A0A7 A094 A12L A0I9 A0EE A135 A152 A18P A18R A08X
## RTN2 3.264143 3.630609 3.838779 2.836670 4.724076 0.6962941 1.819296 1.986657 3.475001 4.354183 3.733788
## NDRG2 9.645246 5.026081 5.260215 3.344884 4.503244 5.8202163 5.403551 4.999541 4.823776 6.402254 4.675284
## CCDC113 3.930012 2.450502 1.773722 5.404862 4.622169 3.1173445 4.118666 3.577636 4.374714 3.983280 3.294215
## FAM63A 5.762041 3.948055 3.928293 5.957079 5.570075 3.9983956 4.021509 5.645919 5.640225 4.190554 3.351270
## ACADS 3.045266 3.193824 4.305221 3.095219 4.583606 3.0785379 2.832452 2.867549 3.070213 5.606610 3.359589
## GMDS 5.038067 4.443301 5.812546 5.134322 4.819258 6.7714094 3.013772 3.917772 3.582233 2.518043 4.138523
## A0TX A09X A1AT A12Q A12T A0RH A07I A04W A12P A0EQ A0D1
## RTN2 2.931286 1.973935 4.178227 2.454749 3.360365 3.105367 3.843009 2.413193 4.780633 2.043937 2.8101153
## NDRG2 6.297263 4.741524 4.883940 4.679603 3.993496 4.467796 3.360024 5.915364 3.728883 4.451327 5.8398955
## CCDC113 4.381832 1.385884 4.041319 5.460908 4.168762 3.280249 5.273710 4.304850 3.611869 3.922623 3.8977020
## FAM63A 4.210461 2.777252 5.143692 7.478075 4.102186 5.490180 6.218413 4.735519 5.428217 3.733726 4.5425832
## ACADS 3.222013 2.480992 2.690258 3.902902 3.739438 3.791578 1.207714 2.316943 4.292261 2.387349 0.8715574
## GMDS 4.649420 4.547114 4.445286 5.259775 4.632893 4.769685 5.248546 5.203775 2.470152 3.986822 6.0863133
## A09G A1B0 A14P A0T1 A137 A13Z A08L A0IK A12D A0XN A0B0
## RTN2 4.336523 2.460993 2.725320 3.987558 3.3557342 3.858600 3.683918 3.805449 4.913829 3.854908 2.937087
## NDRG2 5.890453 3.328238 4.519024 5.339332 4.1665630 5.779159 6.035885 5.045742 5.362417 4.280310 6.399544
## CCDC113 3.385647 5.015205 7.685072 4.294984 3.7349053 2.925652 4.962329 3.799215 4.361665 3.073338 3.187451
## FAM63A 4.905487 4.009917 3.683882 3.896515 4.7856232 4.552264 5.417161 4.361230 4.103027 4.575127 6.084497
## ACADS 3.521845 3.758492 3.220628 3.483945 0.9475664 1.905945 2.902085 2.096262 2.865018 2.541062 4.087720
## GMDS 5.095428 5.425335 5.134124 5.515992 4.2281563 6.193263 5.167644 6.601120 5.207890 3.069358 3.896811
## A18S A0CS A0EI A0IO A0T6 A1AU A07Z A0XS A1BD A08T A12Y
## RTN2 4.885975 4.812521 4.145511 4.770780 3.686174 4.234722 4.668950 5.163421 5.862224 4.492575 3.451556
## NDRG2 5.190614 5.481586 4.209690 4.894866 5.714241 6.655277 5.074468 5.716168 6.367080 5.924680 4.315363
## CCDC113 5.981202 4.514267 4.871415 4.923091 3.999832 4.978289 4.836763 3.099718 4.402046 3.565575 3.035121
## FAM63A 6.839739 5.960769 5.562853 5.903991 5.543870 5.967937 7.315990 5.370638 7.073223 6.133809 6.137805
## ACADS 3.807709 5.826708 3.213199 4.201494 3.211621 4.088356 6.577862 4.426710 4.262734 4.193605 3.455379
## GMDS 4.467859 4.661853 3.977644 4.568149 3.908653 3.413226 3.640991 3.483881 2.866784 5.025717 5.219259
## A0J5 A18F A0AS A0DV A140 A0SU A12A A0RM A0AZ A0EW A0XW
## RTN2 3.324178 3.699449 3.147610 4.551102 3.371083 5.279948 4.599786 4.961715 4.395032 3.669192 4.060707
## NDRG2 5.204543 6.743026 3.310945 6.751697 4.767956 6.742996 6.767056 7.121645 6.166074 7.481286 3.993213
## CCDC113 3.658085 3.213309 3.392015 3.561305 4.266360 4.197921 3.613720 2.031879 4.705795 3.912063 3.859653
## FAM63A 6.019478 6.467441 3.583159 5.693453 7.680580 5.517610 6.374306 6.552616 5.685660 5.385438 5.234679
## ACADS 4.348268 3.839791 2.573175 4.361170 4.958535 3.757448 3.926513 5.375324 3.461114 4.981446 2.939582
## GMDS 2.901918 3.613409 4.553301 4.581463 2.306479 3.604445 4.316497 3.573679 3.908730 4.028187 4.368607
## A12B A0BP A0RG A0T7 A08A A0DK A0SH A18N A06P A15L A0YL
## RTN2 4.955273 3.946813 5.161843 3.628120 5.319757 4.229001 4.549374 5.160065 4.418414 3.003667 4.394415
## NDRG2 6.554334 6.110317 5.282558 7.041361 5.670118 6.234561 5.734280 5.743608 5.550527 5.638583 7.329557
## CCDC113 3.729381 3.599571 3.652475 4.567336 4.213460 2.876254 3.266107 3.799948 3.408737 3.767432 4.225351
## FAM63A 7.175329 5.866863 6.740858 4.849512 6.421754 6.278993 4.586105 6.548107 6.284064 5.833073 5.909271
## ACADS 3.771734 4.873476 3.834633 5.031143 6.435726 3.401421 3.781805 5.203101 4.189855 1.428122 4.124782
## GMDS 4.924317 3.476359 4.232467 3.994755 4.211985 4.533902 4.445566 3.016115 4.291386 4.561102 4.448572
## A1AL A133 A086 A0I8 A0EA A09A A0DS A1B1 A0X0 A1AP A0W5
## RTN2 4.318402 4.567727 3.380619 3.591457 3.934620 3.534916 5.337452 3.156414 4.318445 4.434544 4.053462
## NDRG2 7.671057 5.631257 5.348448 6.711921 6.485034 5.598355 5.431434 6.889978 5.134913 4.996163 6.324229
## CCDC113 4.058701 4.856185 2.812439 4.245995 4.373684 4.435664 3.569027 4.403957 4.249242 3.360406 4.206724
## FAM63A 6.332046 6.715817 5.614007 6.305527 6.607800 6.053269 6.544494 4.557049 6.261542 7.132167 5.686577
## ACADS 3.830086 3.637716 3.446198 3.597418 5.298255 3.821643 3.157999 3.427855 4.405081 2.979350 3.717058
## GMDS 3.988674 4.967355 3.844804 3.978552 3.381281 4.133674 3.789697 4.472276 4.407352 3.292519 4.446478
## A0JF A1AV A0RO A08Z A0RV A0DP A0EX A15R A0FD A0ES A0BM
## RTN2 4.255694 4.976229 3.593910 3.338102 4.312011 4.391099 4.971500 5.829543 5.114808 4.491791 3.854894
## NDRG2 6.107624 4.682798 6.831737 4.578062 6.562096 6.629841 6.442082 6.122818 5.004968 7.224767 7.563725
## CCDC113 3.566409 5.538055 5.843992 4.027111 3.146601 4.792597 3.858766 4.058642 4.246867 4.211227 3.714711
## FAM63A 5.823695 6.984005 5.434283 5.675758 6.527390 6.071293 5.216955 6.802337 5.049330 5.603656 4.972501
## ACADS 4.724552 5.848000 1.918908 3.367570 3.087441 4.333238 3.814054 3.339114 3.457678 3.962619 4.167155
## GMDS 4.618498 5.651612 4.426422 5.717837 4.689314 4.153339 4.377855 2.615647 3.599680 4.249810 4.587572
## A0EU A12X A146 A0CD A0BQ A04A A0CT A0TZ A03L A1AK A0E1
## RTN2 2.760552 3.285527 2.181406 4.831567 4.930042 3.897918 5.226293 1.560674 3.682643 4.174028 3.240652
## NDRG2 4.972966 6.049840 5.570016 4.273907 6.153962 4.727599 6.574909 4.528818 4.927297 6.933249 6.032330
## CCDC113 3.250293 5.094973 4.711167 3.816242 4.304354 3.633439 1.783738 3.897716 4.111116 4.353695 3.004524
## FAM63A 5.821183 6.752349 6.352394 5.779353 6.357639 6.226870 5.881396 5.792156 4.983386 6.927104 6.454520
## ACADS 4.197412 4.716806 2.759397 5.127855 3.385413 1.853465 3.108414 3.464086 2.941760 4.921953 4.474807
## GMDS 3.129062 4.634938 3.824802 5.385437 4.917877 3.285392 1.983430 2.888763 4.328807 2.646618 5.919961
## A0H7 A0FS A0BS A08O A12H A15E A0W4 GO:0000122 GO:0006357 GO:0007155
## RTN2 4.286326 4.728350 3.139900 4.346977 3.287485 4.684112 4.294419 0 0 0
## NDRG2 6.206116 6.857311 6.222359 5.708690 5.043387 6.274357 5.236494 0 0 0
## CCDC113 3.897574 3.088589 4.306467 3.995944 3.665758 4.599318 4.310629 0 0 0
## FAM63A 5.390505 6.047637 6.912236 6.189790 5.943128 5.335620 5.955053 0 0 0
## ACADS 1.802260 5.754979 5.317992 4.488860 4.823124 4.247261 4.631673 0 0 0
## GMDS 3.603636 3.581223 4.686750 3.186237 5.077987 3.627571 4.648448 0 0 0
## GO:0007165 GO:0007411 GO:0008285 GO:0016477 GO:0019221 GO:0030335 GO:0043312 GO:0045893 GO:0045944
## RTN2 0 0 0 0 0 0 0 0 0
## NDRG2 1 0 0 0 0 0 0 0 0
## CCDC113 0 0 0 0 0 0 0 0 0
## FAM63A 0 0 0 0 0 0 0 0 0
## ACADS 0 0 0 0 0 0 0 0 0
## GMDS 0 0 0 0 0 0 0 0 0
## GO:0055114
## RTN2 0
## NDRG2 0
## CCDC113 0
## FAM63A 0
## ACADS 0
## GMDS 0head(tar_read(annot_matrix2))## A0FJ A13E A0G0 A0SX A143 A0DA A0B3 A0I2
## YWHAE 0.04913078 -0.07998211 -0.03284989 -0.20532949 0.06019021 0.03076171 -0.10786154 0.6498440
## EIF4EBP1 0.44748623 0.60521842 0.89460973 -0.14132292 0.13176899 0.03299680 -0.03712469 -0.5214866
## TP53BP1 0.91783419 0.05910121 0.51704453 -0.31372867 0.33091238 -0.22027100 -0.54474306 -1.6020354
## ARAF 0.02274147 -0.45985298 -0.19182192 -0.07482347 -0.02435747 0.41861665 0.43050350 -0.1871466
## ACACA -0.08626782 -0.59269183 0.41117190 -0.85148060 0.76975143 -0.71430870 -0.36347405 1.0776148
## ACCB -0.41662442 -0.06226840 0.82582859 -0.66341044 0.87347870 -0.21752677 -0.26931384 1.5899824
## A0RT A131 A124 A1B6 A1AZ A0YM A04P A04T
## YWHAE -0.01365044 0.4309342 -0.102577549 0.15423052 -0.05039163 0.06663868 0.07178029 -0.12609547
## EIF4EBP1 -0.63485063 1.0525716 -0.009255264 -0.39660615 1.12550091 1.54959594 -0.14261441 0.79519820
## TP53BP1 -0.72072329 -0.8113353 -0.681091817 -0.34914824 0.24034940 -0.17552648 0.01601470 0.20713236
## ARAF -0.37488300 0.3532624 0.070807204 -0.22111950 -0.08041112 -0.44448272 0.27759824 0.05686482
## ACACA -1.25449108 -0.8832967 0.484237104 -0.25114128 0.07222233 -0.19200311 -0.15725206 -0.67267960
## ACCB -0.90135358 -0.6813647 0.045396912 -0.03205812 0.33437025 0.15785199 0.07170919 -0.21057209
## A0AT A0AL A0CE A07R A0FL A150 A0E0 A0U4
## YWHAE -0.03510511 0.02031388 0.006496486 1.022935e-02 -0.02361313 -0.17057438 0.12826354 0.4117473
## EIF4EBP1 0.08817975 -0.04429098 -0.069721010 -3.997427e-05 0.91845032 0.10651340 -0.10974424 1.2536159
## TP53BP1 -0.45684808 -0.31573883 0.650410261 -8.598333e-02 -0.50578279 -0.08917507 -0.05900489 -1.1088154
## ARAF 0.07382528 -0.31804237 0.645008667 5.492385e-01 0.38690508 0.42446259 0.05793049 0.1843648
## ACACA -0.10844835 -0.01201742 0.159326402 -7.381441e-01 -0.21117641 -0.86165684 0.28663889 -0.9652205
## ACCB -0.20688548 0.08417570 0.359152694 -3.718771e-01 -0.02620671 -0.45189197 0.62803284 -1.1004647
## A0XU A0AV A0AR A0RX A0D2 A0CM A0WX A0T0
## YWHAE 0.07403159 0.40683769 0.17772191 0.6671865 0.07213385 -0.17250159 0.2084185 -0.16337411
## EIF4EBP1 -0.10294224 -0.04816999 0.77350218 -0.4982787 0.67030375 0.57317523 -0.1383251 -0.09672684
## TP53BP1 -0.09666688 -0.65666480 0.10875114 -0.7914337 -0.47039823 0.21967364 -0.4942531 -0.42736982
## ARAF 0.06907737 -0.30181209 0.03544246 -0.4584311 -0.11735984 0.05736489 0.1126964 0.35266129
## ACACA -0.11755679 -0.66413755 0.23931506 -0.9456168 -0.55918956 -0.21882664 -0.8601565 0.41070905
## ACCB -0.32518868 -0.01413711 0.69474633 -0.3431517 -0.38162147 -0.06093574 -0.4941083 0.83089602
## A0T2 A04U A0JL A147 A0B9 A1AI A14X A12V
## YWHAE -0.08703159 -0.02779448 -0.2221881 -0.3602582 -0.09746623 -9.038032e-05 -0.02915253 -0.07256821
## EIF4EBP1 0.61464819 0.54281880 -0.7263554 0.2963119 0.28115435 6.590760e-01 -0.41394946 0.14103431
## TP53BP1 0.23084921 0.80963266 -0.1094235 0.1195848 1.03754786 2.063061e-01 -0.71435019 -0.17953619
## ARAF 0.34148365 0.08032620 0.1304061 -0.1486517 -0.03110734 2.986835e-01 -0.36875294 -0.06853516
## ACACA 0.19232127 -0.37590016 -0.2573800 -1.0008629 -0.60781361 2.406539e-01 -1.25448790 -1.09497374
## ACCB 0.60823231 -0.23683087 -0.0209081 -0.6103342 0.03623308 2.013784e-01 -0.79260646 -0.71765484
## A1AY A0D0 A0SK A128 A04D A0A7 A094 A12L
## YWHAE -0.054829765 0.3824269 0.218651975 0.3324081 -0.205548154 -0.1596453 -0.32473305 -0.04344412
## EIF4EBP1 0.007807898 0.6180407 2.348937988 0.5065296 -0.147643395 -0.2242469 0.21593275 0.38455441
## TP53BP1 -0.075287155 -0.4270996 0.005416753 -0.9711423 -0.103927214 -1.1624485 -0.05943466 -0.33648846
## ARAF 0.158501500 0.1395464 -0.068234716 0.1938066 0.006738975 0.1554911 0.49079943 0.41502360
## ACACA -0.685292020 0.3183916 -0.850736831 -0.9275520 0.111768841 -0.1522872 1.20535055 2.07303645
## ACCB -0.180017897 -0.3105551 -0.781911026 -1.2740621 0.357749529 -0.3142226 1.48913627 1.82543036
## A0I9 A0EE A135 A152 A18P A18R A08X A0TX
## YWHAE -0.13519444 0.20855357 0.1863144 -0.35902507 -0.10696223 -0.2053096 0.009604319 0.08891257
## EIF4EBP1 -0.33349040 0.05042412 -0.6957235 0.01114068 -0.29567957 0.1540785 -0.470798283 -0.52618047
## TP53BP1 -1.24733195 -0.15774083 -0.7811252 0.03480274 1.31010433 0.2687635 -0.529870879 -0.90594068
## ARAF 0.05777585 0.51301280 -0.2032814 0.17485319 -0.04975128 0.2218992 -0.010156351 0.47239815
## ACACA 2.20804740 -0.56615145 0.2090943 -0.62119053 -0.54414221 0.1147792 -0.762491820 -0.31338439
## ACCB 2.68643899 -0.57719372 0.4523723 -0.37231047 -0.08379475 0.6008600 -0.447065964 -0.69991211
## A09X A1AT A12Q A12T A0RH A07I A04W A12P
## YWHAE -0.1452121 -0.2137481 -0.02665069 0.02448898 0.05336191 -0.16575908 0.01732674 -0.02834328
## EIF4EBP1 0.9133893 -0.2933581 0.27107573 0.31906683 -0.46378954 -0.44816287 0.39216603 0.74462774
## TP53BP1 -0.4881384 0.4174163 0.43851075 -0.65194847 -1.41979235 0.02476909 -0.16114981 -0.11724732
## ARAF 1.0728245 -0.1423640 -0.27802677 0.03342477 -0.01921547 0.09001330 0.43137927 -0.02968595
## ACACA 1.5325083 0.5937637 1.03762278 0.32105385 -1.00276346 1.25877264 0.23361773 0.78195934
## ACCB 1.5711548 0.2055559 1.08066133 -0.08252071 -0.57105951 1.41782931 -0.19130685 0.69284338
## A0EQ A0D1 A09G A1B0 A14P A0T1 A137 A13Z
## YWHAE -0.01786035 -0.08492728 -0.19168728 0.21474769 -0.05799150 -0.21747907 -0.08803255 0.04933478
## EIF4EBP1 -0.24529946 1.24934075 0.06083982 0.05885925 0.47517735 -0.18302393 1.10231628 0.97598320
## TP53BP1 -0.26047282 0.38597603 -0.16245628 -0.74753567 -0.09938019 0.04312771 0.10440564 0.43356778
## ARAF -0.24564903 0.02061657 0.14395121 0.06822545 -0.40126092 0.30801515 -0.14032776 0.19165835
## ACACA -0.01749434 -0.95814121 1.19739063 -0.54739970 -0.39300372 1.32309400 0.37771145 0.14075020
## ACCB 0.27193951 -0.56385715 1.30890455 -0.14094375 -0.59616259 1.74511280 0.30831068 -0.06501095
## A08L A0IK A12D A0XN A0B0 A18S A0CS A0EI
## YWHAE -0.30622577 0.49932334 -0.16633329 0.2645818 0.16583752 -0.1594390 -0.022463404 0.14154974
## EIF4EBP1 -0.05871105 -0.31424236 -0.25664719 0.9454482 -0.62007726 0.7811332 0.097860488 0.79883067
## TP53BP1 -0.19369904 -1.26675743 0.03191129 -0.2737528 0.08543817 0.6475790 -0.001748506 0.09620899
## ARAF 0.19365136 -0.03038972 -0.12319996 -0.3084782 0.11688457 0.1303308 0.334964464 -0.09385336
## ACACA 0.15529593 -1.57896525 -0.15933744 -0.2625758 -0.03561580 0.2899688 0.749944295 -1.21085371
## ACCB 0.52746407 -1.01851966 -0.38789434 -0.3747893 0.35980241 0.8081174 0.981050852 -0.77786324
## A0IO A0T6 A1AU A07Z A0XS A1BD A08T A12Y
## YWHAE 0.08642076 0.10550155 0.37996457 -0.4678713 0.08678585 -0.1289187 -0.07846243 -0.139624632
## EIF4EBP1 -0.65464641 0.18094438 0.33115039 -0.6534718 -0.62969677 -0.2848388 0.15330913 -0.155897261
## TP53BP1 0.24605366 0.19713456 -0.09354243 0.3289483 -0.03750029 0.5523604 0.29559472 0.280028069
## ARAF -0.12354224 -0.34896948 -0.55963733 0.1544671 0.04171820 0.1172685 0.14778960 0.002036919
## ACACA -0.17369193 -0.28008209 0.77103294 2.2279160 -1.07151387 -0.0161823 -0.43791724 0.150767232
## ACCB -0.55539035 -0.05912806 0.03904519 2.4836557 -0.66809161 0.2107903 -0.30475747 0.198280480
## A0J5 A18F A0AS A0DV A140 A0SU A12A A0RM
## YWHAE -0.21552677 0.09568197 -0.04635576 0.45259573 -0.19219433 0.02704793 -0.152233346 0.07891276
## EIF4EBP1 -0.60762880 -0.12126500 -0.19201165 -0.28018656 -0.38325583 -0.13660724 -0.229133813 0.26233805
## TP53BP1 -0.05888632 -0.26453804 0.17448861 -0.27528775 -0.03076983 0.15716694 0.262321295 -0.19091957
## ARAF 0.46568117 -0.02355888 -0.08826188 -0.08613218 0.01456160 -0.04209240 0.003812493 -0.49300086
## ACACA -0.72991851 -0.03039667 0.89393507 -0.51919125 0.92510859 0.45384257 -0.688932842 -0.63912745
## ACCB -0.62076963 -0.13891954 0.91059564 -0.69367323 1.20033224 0.30185448 -0.261832300 -0.32742498
## A0AZ A0EW A0XW A12B A0BP A0RG A0T7 A08A
## YWHAE 0.44813177 0.24075610 -0.1921050 0.28809052 0.6142197 0.006611735 0.09425692 -0.2893167
## EIF4EBP1 -0.07537384 0.95510271 -0.2249715 0.28751521 -0.3370092 -0.266905610 0.15714997 -0.2902958
## TP53BP1 -0.23187084 0.01356203 0.4909079 0.01666412 -0.1732544 0.235397041 -0.10476700 0.7068535
## ARAF 0.36733354 -0.15248756 -0.2215480 -0.09751097 -0.2412493 -0.169662569 -0.17345254 0.1496799
## ACACA -0.19927512 -0.62426734 1.1461389 0.40130928 1.0064003 0.062619936 0.39504278 0.6492362
## ACCB -0.86401722 -0.38855134 0.9585337 -1.12405209 1.0776383 0.405224079 -0.40038358 1.1057882
## A0DK A0SH A18N A06P A15L A0YL A1AL A133
## YWHAE 0.208312992 -0.2146377 0.02057174 0.5320804 0.24446389 0.02441686 0.25962881 0.233985222
## EIF4EBP1 0.006902877 -0.0348712 -0.47094946 0.3974088 0.35611833 0.31565682 -0.47644956 0.001715192
## TP53BP1 0.461756644 -0.2300382 0.33733423 -0.4671832 0.46874689 0.48026692 -0.05283317 -0.539913732
## ARAF -0.083873409 0.2163685 -0.13868696 -0.1757303 -0.16117601 -0.36611220 -0.45663158 -0.130470151
## ACACA 0.243873461 1.3612271 -0.65434685 -0.0199524 0.06804862 -0.40401486 -0.10943659 0.068201372
## ACCB -0.609707357 1.5125324 -0.17100515 0.2557449 -0.03833923 0.02396029 0.08630307 0.186355403
## A086 A0I8 A0EA A09A A0DS A1B1 A0X0 A1AP
## YWHAE -0.06022245 0.2593484 0.27887146 0.1501800 0.08160479 0.12138451 -0.1459906 0.06991067
## EIF4EBP1 0.43571413 0.3529033 -0.52845711 0.3721886 0.32026039 0.02523423 -0.2877079 -0.02022466
## TP53BP1 -0.22378107 -0.4190778 0.30041806 -0.3300114 0.21959367 -0.46314039 0.7142044 0.33062720
## ARAF -0.03175502 -0.1608799 -0.02967306 0.3415218 -0.13344800 -0.23412186 -0.1183153 -0.40823958
## ACACA 0.43090563 1.5458696 -0.13707113 0.4368219 -0.94325459 -0.78851367 0.4255080 -0.67741788
## ACCB 0.96868828 0.8709450 0.18134112 0.4566380 -0.77731483 -0.49408623 0.6665537 -0.74875727
## A0W5 A0JF A1AV A0RO A08Z A0RV A0DP A0EX
## YWHAE -0.068143509 -0.082361654 -0.008565319 0.20073233 0.21562355 0.1174676 0.61208279 0.19225553
## EIF4EBP1 -0.361338800 -0.289923833 -0.359263948 -0.09592371 -0.11602150 0.8533835 -0.24256401 0.16823552
## TP53BP1 0.255844248 0.006400965 0.645392566 0.22659302 0.09092303 0.2852072 -0.48847031 -0.36727570
## ARAF -0.008508998 0.234631425 -0.218606460 -0.09025331 0.09592512 -0.3121126 -0.09959578 -0.11410952
## ACACA -0.378758677 0.070230030 0.821756843 0.30810017 -0.42072622 -1.2115732 0.16090718 -0.25781609
## ACCB -0.601903890 0.324889398 0.884751097 0.83381913 -0.01180335 -0.8640820 0.75451871 -0.05032689
## A15R A0FD A0ES A0BM A0EU A12X A146 A0CD
## YWHAE 0.15951372 -0.0003992998 0.331390028 0.234077379 0.6602348 0.01399538 -0.12540871 -0.10988943
## EIF4EBP1 1.43036763 0.3021787216 0.777901151 -0.044702482 -0.3887336 2.04807978 -0.12822238 -0.40588993
## TP53BP1 1.19168757 0.7830962010 -0.179800997 0.249263206 -0.4445914 0.46757149 0.18580518 -0.26228104
## ARAF 0.10669297 -0.0353334053 -0.007782728 0.008670462 -0.1844897 -0.43438697 0.53235978 0.08775629
## ACACA 0.43827642 0.1019272573 -0.062342374 0.517704430 -0.4002549 0.39724306 0.06463656 0.59588277
## ACCB 0.03445577 -0.7286720277 0.217673154 0.845228991 -0.4984337 0.43535304 0.28106347 0.73116503
## A0BQ A04A A0CT A0TZ A03L A1AK A0E1 A0H7
## YWHAE 0.29664725 -0.10341419 -0.01271869 0.2534825 -0.06255032 -0.00628647 0.4900114 0.6085458
## EIF4EBP1 -0.34952985 0.37093698 0.23785158 -0.3171774 0.02082981 -0.29036200 -0.1878629 -0.4059596
## TP53BP1 -0.35319591 0.58863472 -0.83354244 -0.2604502 -0.20783825 0.01482852 -0.1164977 -0.7563690
## ARAF -0.03755203 -0.02265695 -0.18495062 -0.1670993 0.05328247 -0.23236417 -0.2357682 -0.2125003
## ACACA 2.09181497 -0.47350147 1.16285497 -0.0904107 -0.16965978 0.66700812 -0.4736231 -1.2983173
## ACCB 1.43110561 -1.05352669 1.22102621 -0.1402257 -0.36904927 0.53386343 -0.5331481 -0.3960725
## A0FS A0BS A08O A12H A15E A0W4 GO:0000082 GO:0000122
## YWHAE 0.28588916 0.10558917 -0.082599309 0.04428213 -0.08457028 -0.01095410 0 0
## EIF4EBP1 -0.70731155 0.35069685 -0.434463492 -0.45207404 -0.24924165 -0.34544615 1 0
## TP53BP1 0.19350409 0.58851125 -0.113726155 1.16034608 0.58585849 0.44976669 0 0
## ARAF -0.29306315 0.23146311 -0.005437017 -0.26354606 0.18079844 0.06987084 0 0
## ACACA -0.31986613 0.68697199 -0.098271102 0.54047479 1.38595816 -0.30662370 0 0
## ACCB -0.08705945 -0.03232127 -0.373714666 0.69083131 0.95161707 -0.18940735 0 0
## GO:0000165 GO:0000187 GO:0001525 GO:0001666 GO:0001701 GO:0001934 GO:0006357 GO:0006367 GO:0006468
## YWHAE 1 0 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 0 0 0 0 0 0 0 0
## ARAF 1 0 0 0 0 0 0 0 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0006915 GO:0006974 GO:0006977 GO:0007050 GO:0007155 GO:0007165 GO:0007169 GO:0007411 GO:0007507
## YWHAE 0 0 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 1 0 0 0 0 0 0 0
## ARAF 0 0 0 0 0 0 0 0 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0007568 GO:0008283 GO:0008284 GO:0008285 GO:0010468 GO:0010628 GO:0010629 GO:0016032 GO:0016579
## YWHAE 0 0 0 0 0 0 0 1 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 0 0 0 0 0 0 0 0
## ARAF 0 0 0 0 0 0 0 0 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0018105 GO:0018107 GO:0018108 GO:0019221 GO:0030154 GO:0030335 GO:0032355 GO:0032869 GO:0033138
## YWHAE 0 0 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 0 0 0 0 0 0 0 0
## ARAF 0 0 0 0 0 0 0 0 1
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0033674 GO:0035556 GO:0042060 GO:0042127 GO:0042493 GO:0042981 GO:0043065 GO:0043066 GO:0045471
## YWHAE 0 1 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 1
## TP53BP1 0 0 0 0 0 0 0 0 0
## ARAF 0 0 0 0 0 0 0 1 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0045892 GO:0045893 GO:0045944 GO:0046777 GO:0048538 GO:0050821 GO:0051091 GO:0051897 GO:0070374
## YWHAE 0 0 0 0 0 0 0 0 0
## EIF4EBP1 0 0 0 0 0 0 0 0 0
## TP53BP1 0 1 1 0 0 0 1 0 0
## ARAF 0 0 0 0 0 0 0 0 0
## ACACA 0 0 0 0 0 0 0 0 0
## ACCB 0 0 0 0 0 0 0 0 0
## GO:0071456 GO:0090090 GO:0098609 GO:1901796 GO:2001244
## YWHAE 0 0 0 0 0
## EIF4EBP1 1 0 0 0 0
## TP53BP1 0 0 0 0 0
## ARAF 0 0 0 0 0
## ACACA 0 0 0 0 0
## ACCB 0 0 0 0 0p <- heatmaply(categ_matrix1,
dendrogram = "none",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(categ_matrix1),
labRow = rownames(categ_matrix1),
heatmap_layers = theme(axis.line=element_blank())
)
p
# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")p <- heatmaply(categ_matrix2,
dendrogram = "none",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(categ_matrix2),
labRow = rownames(categ_matrix2),
heatmap_layers = theme(axis.line=element_blank())
)
p
# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")Gene Ontology used: BP
Min. number of genes applied to filter: 8
Annotated categories: 13 (for data/mrna.csv)
Annotated categories: 61 (for data/prots.csv)
Features+Categs in ROWS: 213 (for data/mrna.csv)
Features+Categs in ROWS: 172 (for data/prots.csv)
Samples in COLUMNS: 150 (for data/mrna.csv)
Samples in COLUMNS: 150 (for data/prots.csv)
(Showing only partial output)
tail(tar_read(expd_matrix1), ncol(categ_matrix1))[,1:6]## A0FJ A13E A0G0 A0SX A143 A0DA
## GO:0000122 4.975514 5.014288 4.354496 5.287829 4.388574 4.703340
## GO:0006357 5.358933 5.651490 5.159456 5.959377 5.084826 5.487008
## GO:0007155 6.068514 5.938148 6.008194 6.606449 5.609092 6.493687
## GO:0007165 5.190907 5.179589 5.086928 5.896685 4.964933 5.289600
## GO:0007411 5.209696 4.911230 5.568726 6.002954 5.247555 5.849531
## GO:0008285 4.850748 5.628700 5.559798 6.196543 5.559160 5.732965
## GO:0016477 4.467429 5.545002 6.084154 6.342951 6.550521 6.424268
## GO:0019221 4.285585 4.339224 4.442392 6.117472 5.362300 5.306170
## GO:0030335 4.940894 4.526876 5.186276 5.923001 4.685379 5.340370
## GO:0043312 5.256378 4.540444 5.513148 5.530951 5.754397 4.984525
## GO:0045893 4.945589 4.911753 4.797016 5.473086 5.192641 4.559235
## GO:0045944 5.014163 5.063401 4.732361 5.710688 5.062169 5.162256
## GO:0055114 4.507878 4.414600 4.918826 4.932707 4.894436 4.802867tail(tar_read(exc_exp_mat1), ncol(categ_matrix1))[,1:6]## A0FJ A13E A0G0 A0SX A143 A0DA
## ELP2 6.581283 7.150755 6.430628 5.606317 5.903435 5.629345
## ALOX5 2.657454 2.979337 3.373541 5.027281 3.443978 3.237207
## AMN1 4.015401 2.948135 3.063473 2.883810 3.883034 2.753396
## CERCAM 5.155279 6.071058 5.737308 6.440455 4.812939 7.057174
## SEMA3C 7.709125 6.657197 3.978155 6.891619 3.298393 3.948533
## KRT8 11.196906 9.584007 10.423796 10.056940 8.969229 10.039768
## TP53INP2 5.564430 5.923025 5.980527 4.939562 6.410238 4.412090
## JAM3 3.991982 3.343699 3.289314 4.369947 3.371594 4.701925
## ZNF680 3.352637 3.637142 3.633879 3.987233 3.264969 4.110823
## PBX1 7.880923 7.807082 7.441712 8.021253 8.138553 7.614134
## GO:0016477 4.467429 5.545002 6.084154 6.342951 6.550521 6.424268
## GO:0043312 5.256378 4.540444 5.513148 5.530951 5.754397 4.984525
## GO:0055114 4.507878 4.414600 4.918826 4.932707 4.894436 4.802867dim(tar_read(exc_exp_mat1))## [1] 203 150tail(tar_read(expd_matrix2), ncol(categ_matrix2))[,1:6]## A0FJ A13E A0G0 A0SX A143 A0DA
## GO:0000082 0.08489980 0.336677822 0.1119364371 0.132907983 0.2131787559 0.072103768
## GO:0000122 -0.27482556 -0.147144823 -0.4183629026 -0.292259414 -0.2973200923 -0.336981518
## GO:0000165 0.07622744 0.189509183 0.1256605044 0.058991557 0.1196075280 0.097879156
## GO:0000187 -0.02372494 0.191530915 0.2009855473 0.322285592 -0.0869276571 0.224646972
## GO:0001525 0.13043805 -0.129834380 -0.0921494909 0.268844404 -0.3373306412 -0.017102932
## GO:0001666 0.08944101 -0.140874501 -0.2420583339 0.140057794 -0.1545093549 -0.278546050
## GO:0001701 -0.08369993 -0.117808693 -0.2400020828 -0.262398372 -0.1063332010 -0.207672715
## GO:0001934 0.22167378 -0.071793185 0.0059517080 -0.004695533 0.3786330061 -0.026809124
## GO:0006357 -0.44105207 0.018582923 -0.4456880716 -0.107618121 -0.1794351142 -0.263030185
## GO:0006367 -0.37807640 -0.217422477 -0.4515217890 -0.382301742 -0.4628282752 -0.402502336
## GO:0006468 0.04384241 -0.012195461 0.0686075696 0.214935373 0.0561904289 -0.013535358
## GO:0006915 0.12761670 -0.026639992 -0.1342128706 0.210012976 -0.0324969741 -0.062760267
## GO:0006974 0.18917421 -0.033450403 0.1404693246 0.055255983 -0.1910492830 0.008739606
## GO:0006977 0.33058430 0.274551206 0.2575656626 0.360402894 0.3617389207 -0.084608669
## GO:0007050 0.03441458 0.292665738 0.0556843231 0.291426874 0.1417121906 0.177136263
## GO:0007155 -0.06441327 0.006709432 -0.0339015759 -0.159775692 -0.0679366169 0.150489660
## GO:0007165 -0.27900782 -0.266694235 -0.1644668807 -0.110421310 -0.2506492541 -0.263054266
## GO:0007169 0.07685028 0.523227325 0.5631833767 0.365590109 0.1999179038 0.113374476
## GO:0007411 -0.09898379 0.331088481 0.3261074003 -0.064801905 -0.1738483420 -0.147993794
## GO:0007507 -0.02032936 0.111431770 -0.0285711480 0.158872521 0.0991334224 0.118190996
## GO:0007568 0.07790115 -0.420646638 0.1032335058 -0.001736004 0.0086647605 -0.102973234
## GO:0008283 0.03679451 -0.144167148 0.0255178996 -0.111399009 0.0840318788 -0.052401503
## GO:0008284 0.08482870 0.257111457 0.0005207242 0.197894491 -0.0236297526 0.022160249
## GO:0008285 -0.11138998 -0.166885018 -0.1626436833 -0.211962199 -0.1376858891 -0.105234086
## GO:0010468 0.01125860 -0.153391521 -0.2176228032 -0.007971024 -0.4203021508 -0.054905609
## GO:0010628 -0.00122858 -0.098698107 -0.1055718003 0.066310240 -0.1366106255 0.080458342
## GO:0010629 -0.23619110 -0.028785330 -0.3892505117 -0.223956091 -0.3021354399 -0.240027932
## GO:0016032 -0.07457173 -0.010786512 0.0914214747 0.048616664 0.0438110215 0.009434538
## GO:0016579 -0.48380275 -0.365095246 -0.6127620199 -0.333712327 -0.6224947667 -0.506192428
## GO:0018105 0.06317664 -0.117787592 -0.0358040097 0.247075359 -0.0503240522 -0.033782045
## GO:0018107 0.16622397 -0.052166874 -0.1429365756 0.216677404 -0.1240914732 0.003439253
## GO:0018108 0.03007974 0.268677229 0.1898227851 0.418797935 0.1536240352 0.089635663
## GO:0019221 -0.06805777 0.173421854 -0.0334762431 0.172616196 -0.4219052089 0.208626430
## GO:0030154 0.06266369 -0.017867445 -0.0586608115 0.202329129 0.3572727979 -0.055773142
## GO:0030335 0.07092124 0.345829604 -0.1007203072 0.418595430 0.1003942279 -0.064002287
## GO:0032355 -0.34406908 -0.446365697 -0.1666957447 -0.529643452 -0.6018513487 -0.370357956
## GO:0032869 0.24803647 -0.180192879 -0.0891644310 0.224420710 0.1584007938 0.029553808
## GO:0033138 0.36210715 -0.283654291 -0.5135656042 0.095601671 0.2240143146 -0.249247057
## GO:0033674 0.05309816 0.366930337 0.1290877119 0.185115483 0.1810435065 0.034244876
## GO:0035556 -0.04198901 -0.065201822 -0.0669765327 -0.043429659 0.0104424180 -0.005881260
## GO:0042060 0.05087015 0.006398232 -0.0453615084 0.004516628 0.4749383469 0.133403389
## GO:0042127 -0.06461140 0.352299355 0.3414221430 0.629645793 -0.2558531062 0.306249681
## GO:0042493 0.10065786 -0.100860898 0.0719475904 -0.068457753 -0.1113006377 -0.067164409
## GO:0042981 -0.38891545 -0.314969068 -0.4301307672 -0.186592306 -0.3627193499 -0.306987364
## GO:0043065 -0.06841879 -0.177206068 -0.0437627994 -0.095497340 -0.0089997349 0.064977860
## GO:0043066 0.17748119 0.084221187 0.0446931651 0.087754375 0.0674620117 0.083559240
## GO:0045471 -0.20824125 -0.132666688 -0.1576763043 -0.182859533 -0.2209665652 -0.224879055
## GO:0045892 -0.07322803 0.196502210 0.0960542524 -0.179838876 0.1453523156 0.098838332
## GO:0045893 -0.17324920 -0.177955202 -0.1334929204 -0.271777012 -0.0048038792 -0.177876574
## GO:0045944 -0.19587062 -0.084388027 -0.1659883857 -0.138425902 -0.0438597330 -0.109792850
## GO:0046777 0.21686266 0.226945389 0.2381816961 0.228248405 0.4362714716 0.093550313
## GO:0048538 -0.09674308 -0.440442887 -0.3333299382 -0.136174964 -0.4601796000 -0.262351567
## GO:0050821 0.26731790 -0.077598349 -0.0925007853 0.064325005 -0.0006906611 0.101583260
## GO:0051091 -0.31695970 -0.073274211 -0.3805173383 -0.425677409 -0.5235161696 -0.167380867
## GO:0051897 -0.44175817 -0.119354152 -0.3978241519 -0.221571036 -0.2969110597 -0.383017751
## GO:0070374 0.29051323 0.317418294 0.1340562890 0.169023275 0.6261227595 0.125945184
## GO:0071456 0.41857396 0.092164299 0.0413925417 0.164705551 0.0884956352 0.061850564
## GO:0090090 0.09997505 -0.334316780 -0.3138133989 -0.005110155 -0.2443231857 -0.274596166
## GO:0098609 0.21100026 -0.098915205 0.1107148763 -0.116176166 0.2025518820 -0.012399848
## GO:1901796 0.05604931 -0.090767252 0.0890972070 0.199254450 -0.0493431138 -0.020527543
## GO:2001244 0.21073007 -0.231262473 -0.6335138888 0.361176457 -0.5217544145 -0.369090924tail(tar_read(exc_exp_mat2), ncol(categ_matrix2))[,1:6]## A0FJ A13E A0G0 A0SX A143 A0DA
## MYC 0.40816872 0.915680791 0.3622558974 0.377608437 -0.3938185963 0.386375498
## EEF2 0.51892889 -0.057882454 0.0822064011 0.031720911 0.1524366587 -0.008218280
## EEF2K 0.78631036 0.099986700 -0.4344238627 -0.152924039 -0.0069182846 -0.041437672
## EIF4E -0.32593374 0.262824659 0.1954646088 -0.192116025 -0.5683452406 -0.280233782
## MTOR 0.25732405 -0.284464729 -0.0346463173 0.064513185 0.4690906677 -0.015801229
## CDKN1B 0.21684640 0.196963771 -0.4627652826 0.405618773 0.1937906623 -0.501023915
## MAPK14 -0.44966262 -0.515821916 -0.4727346036 0.063977828 -0.2884401295 -0.068335302
## TP53 0.08102586 0.356791900 -0.2257194321 0.450279444 -0.1454860712 0.354130551
## RPS6KB1 -0.22319487 -0.009881423 -0.2702739223 -0.137369722 0.3791794434 -0.075378738
## RPS6KA1 -0.15741891 0.503641937 0.3531037078 -0.146854930 0.6343870555 0.057943379
## GO:0000082 0.08489980 0.336677822 0.1119364371 0.132907983 0.2131787559 0.072103768
## GO:0000165 0.07622744 0.189509183 0.1256605044 0.058991557 0.1196075280 0.097879156
## GO:0000187 -0.02372494 0.191530915 0.2009855473 0.322285592 -0.0869276571 0.224646972
## GO:0001525 0.13043805 -0.129834380 -0.0921494909 0.268844404 -0.3373306412 -0.017102932
## GO:0001666 0.08944101 -0.140874501 -0.2420583339 0.140057794 -0.1545093549 -0.278546050
## GO:0001701 -0.08369993 -0.117808693 -0.2400020828 -0.262398372 -0.1063332010 -0.207672715
## GO:0001934 0.22167378 -0.071793185 0.0059517080 -0.004695533 0.3786330061 -0.026809124
## GO:0006367 -0.37807640 -0.217422477 -0.4515217890 -0.382301742 -0.4628282752 -0.402502336
## GO:0006468 0.04384241 -0.012195461 0.0686075696 0.214935373 0.0561904289 -0.013535358
## GO:0006915 0.12761670 -0.026639992 -0.1342128706 0.210012976 -0.0324969741 -0.062760267
## GO:0006974 0.18917421 -0.033450403 0.1404693246 0.055255983 -0.1910492830 0.008739606
## GO:0006977 0.33058430 0.274551206 0.2575656626 0.360402894 0.3617389207 -0.084608669
## GO:0007050 0.03441458 0.292665738 0.0556843231 0.291426874 0.1417121906 0.177136263
## GO:0007169 0.07685028 0.523227325 0.5631833767 0.365590109 0.1999179038 0.113374476
## GO:0007507 -0.02032936 0.111431770 -0.0285711480 0.158872521 0.0991334224 0.118190996
## GO:0007568 0.07790115 -0.420646638 0.1032335058 -0.001736004 0.0086647605 -0.102973234
## GO:0008283 0.03679451 -0.144167148 0.0255178996 -0.111399009 0.0840318788 -0.052401503
## GO:0008284 0.08482870 0.257111457 0.0005207242 0.197894491 -0.0236297526 0.022160249
## GO:0010468 0.01125860 -0.153391521 -0.2176228032 -0.007971024 -0.4203021508 -0.054905609
## GO:0010628 -0.00122858 -0.098698107 -0.1055718003 0.066310240 -0.1366106255 0.080458342
## GO:0010629 -0.23619110 -0.028785330 -0.3892505117 -0.223956091 -0.3021354399 -0.240027932
## GO:0016032 -0.07457173 -0.010786512 0.0914214747 0.048616664 0.0438110215 0.009434538
## GO:0016579 -0.48380275 -0.365095246 -0.6127620199 -0.333712327 -0.6224947667 -0.506192428
## GO:0018105 0.06317664 -0.117787592 -0.0358040097 0.247075359 -0.0503240522 -0.033782045
## GO:0018107 0.16622397 -0.052166874 -0.1429365756 0.216677404 -0.1240914732 0.003439253
## GO:0018108 0.03007974 0.268677229 0.1898227851 0.418797935 0.1536240352 0.089635663
## GO:0030154 0.06266369 -0.017867445 -0.0586608115 0.202329129 0.3572727979 -0.055773142
## GO:0032355 -0.34406908 -0.446365697 -0.1666957447 -0.529643452 -0.6018513487 -0.370357956
## GO:0032869 0.24803647 -0.180192879 -0.0891644310 0.224420710 0.1584007938 0.029553808
## GO:0033138 0.36210715 -0.283654291 -0.5135656042 0.095601671 0.2240143146 -0.249247057
## GO:0033674 0.05309816 0.366930337 0.1290877119 0.185115483 0.1810435065 0.034244876
## GO:0035556 -0.04198901 -0.065201822 -0.0669765327 -0.043429659 0.0104424180 -0.005881260
## GO:0042060 0.05087015 0.006398232 -0.0453615084 0.004516628 0.4749383469 0.133403389
## GO:0042127 -0.06461140 0.352299355 0.3414221430 0.629645793 -0.2558531062 0.306249681
## GO:0042493 0.10065786 -0.100860898 0.0719475904 -0.068457753 -0.1113006377 -0.067164409
## GO:0042981 -0.38891545 -0.314969068 -0.4301307672 -0.186592306 -0.3627193499 -0.306987364
## GO:0043065 -0.06841879 -0.177206068 -0.0437627994 -0.095497340 -0.0089997349 0.064977860
## GO:0043066 0.17748119 0.084221187 0.0446931651 0.087754375 0.0674620117 0.083559240
## GO:0045471 -0.20824125 -0.132666688 -0.1576763043 -0.182859533 -0.2209665652 -0.224879055
## GO:0045892 -0.07322803 0.196502210 0.0960542524 -0.179838876 0.1453523156 0.098838332
## GO:0046777 0.21686266 0.226945389 0.2381816961 0.228248405 0.4362714716 0.093550313
## GO:0048538 -0.09674308 -0.440442887 -0.3333299382 -0.136174964 -0.4601796000 -0.262351567
## GO:0050821 0.26731790 -0.077598349 -0.0925007853 0.064325005 -0.0006906611 0.101583260
## GO:0051091 -0.31695970 -0.073274211 -0.3805173383 -0.425677409 -0.5235161696 -0.167380867
## GO:0051897 -0.44175817 -0.119354152 -0.3978241519 -0.221571036 -0.2969110597 -0.383017751
## GO:0070374 0.29051323 0.317418294 0.1340562890 0.169023275 0.6261227595 0.125945184
## GO:0071456 0.41857396 0.092164299 0.0413925417 0.164705551 0.0884956352 0.061850564
## GO:0090090 0.09997505 -0.334316780 -0.3138133989 -0.005110155 -0.2443231857 -0.274596166
## GO:0098609 0.21100026 -0.098915205 0.1107148763 -0.116176166 0.2025518820 -0.012399848
## GO:1901796 0.05604931 -0.090767252 0.0890972070 0.199254450 -0.0493431138 -0.020527543
## GO:2001244 0.21073007 -0.231262473 -0.6335138888 0.361176457 -0.5217544145 -0.369090924dim(tar_read(exc_exp_mat2))## [1] 162 150tail(tar_read(int_exp_mat), 10)[,1:6]## A0FJ A13E A0G0 A0SX A143 A0DA
## GO:0000122 2.350344 2.433572 1.968067 2.497785 2.045627 2.183179
## GO:0006357 2.458940 2.835037 2.356884 2.925879 2.452696 2.611989
## GO:0007155 3.002050 2.972429 2.987146 3.223337 2.770578 3.322088
## GO:0007165 2.455950 2.456448 2.461231 2.893132 2.357142 2.513273
## GO:0007411 2.555356 2.621159 2.947417 2.969076 2.536853 2.850768
## GO:0008285 2.369679 2.730908 2.698577 2.992290 2.710737 2.813866
## GO:0019221 2.108764 2.256323 2.204458 3.145044 2.470198 2.757398
## GO:0030335 2.505908 2.436353 2.542778 3.170798 2.392886 2.638184
## GO:0045893 2.386170 2.366899 2.331761 2.600655 2.593919 2.190679
## GO:0045944 2.409146 2.489506 2.283186 2.786131 2.509154 2.526232dim(tar_read(int_exp_mat))## [1] 10 150Features+Categs in ROWS; Samples in COLUMNS
p <- heatmaply(int_exp_mat,
#dendrogram = "row",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(int_exp_mat),
labRow = rownames(int_exp_mat),
heatmap_layers = theme(axis.line=element_blank())
)
p# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")Features+Categs in ROWS; Samples in COLUMNS
p <- heatmaply(expd_matrix1,
#dendrogram = "row",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(expd_matrix1),
labRow = rownames(expd_matrix1),
heatmap_layers = theme(axis.line=element_blank())
)
p# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")p <- heatmaply(expd_matrix2,
#dendrogram = "row",
xlab = "", ylab = "",
main = "",
scale = "none",
margins = c(60,100,40,20),
#grid_color = "white",
#grid_width = 0,
titleX = FALSE,
hide_colorbar = FALSE,
branches_lwd = 0.1,
label_names = c("Feature", "Sample", "Value"),
fontsize_row = 5, fontsize_col = 5,
labCol = colnames(expd_matrix2),
labRow = rownames(expd_matrix2),
heatmap_layers = theme(axis.line=element_blank())
)
p# save the widget
# library(htmlwidgets)
# saveWidget(p, file= "~/.../heatmap.html")